Package: ChIC
Title: Quality Control Pipeline for ChIP-Seq Data
Version: 1.19.0
Author: Carmen Maria Livi
Maintainer: Carmen Maria Livi <carmen.livi@external.ifom.eu>
Description: Quality control (QC) pipeline for ChIP-seq data using a comprehensive set of QC metrics, including previously proposed metrics as well as novel ones, based on local characteristics of the enrichment profile. The package provides functions to calculate a set of QC metrics, a compendium with reference values and machine learning models to score sample quality.
License: GPL-2
Encoding: UTF-8
Imports: ChIC.data (>= 1.11.1), caTools, methods, GenomicRanges,
        IRanges, parallel, progress, randomForest, caret, grDevices,
        stats, utils, graphics, S4Vectors, BiocGenerics,
        genomeIntervals, Rsamtools
Depends: spp, R (>= 3.6)
biocViews: ChIPSeq, QualityControl
RoxygenNote: 7.1.1
git_url: https://git.bioconductor.org/packages/ChIC
git_branch: master
git_last_commit: 6da555b
git_last_commit_date: 2022-11-01
Date/Publication: 2022-11-01
NeedsCompilation: no
Packaged: 2022-11-01 21:32:13 UTC; biocbuild
Built: R 4.3.1; ; 2023-10-12 11:58:00 UTC; unix
