site-packages/virsorter-2.2.4.dist-info/INSTALLER
site-packages/virsorter-2.2.4.dist-info/LICENSE
site-packages/virsorter-2.2.4.dist-info/METADATA
site-packages/virsorter-2.2.4.dist-info/RECORD
site-packages/virsorter-2.2.4.dist-info/REQUESTED
site-packages/virsorter-2.2.4.dist-info/WHEEL
site-packages/virsorter-2.2.4.dist-info/direct_url.json
site-packages/virsorter-2.2.4.dist-info/entry_points.txt
site-packages/virsorter-2.2.4.dist-info/top_level.txt
site-packages/virsorter/Snakefile
site-packages/virsorter/__init__.py
site-packages/virsorter/config.py
site-packages/virsorter/envs/vs2.yaml
site-packages/virsorter/rules/classify.smk
site-packages/virsorter/rules/extract-feature.smk
site-packages/virsorter/rules/preprocess.smk
site-packages/virsorter/rules/setup-retry.smk
site-packages/virsorter/rules/setup.smk
site-packages/virsorter/rules/train-feature.smk
site-packages/virsorter/rules/train-model.smk
site-packages/virsorter/rules/unused.smk
site-packages/virsorter/scripts/add-extra-to-fullseq-fasta-header.py
site-packages/virsorter/scripts/add-extra-to-lt2gene-fasta-header.py
site-packages/virsorter/scripts/add-extra-to-table.py
site-packages/virsorter/scripts/add-hallmark-to-taxfile.py
site-packages/virsorter/scripts/add-length-to-table.py
site-packages/virsorter/scripts/add-suffix-seqname-keep-desc.py
site-packages/virsorter/scripts/add-suffix-seqname.py
site-packages/virsorter/scripts/add-unaligned-to-hmm-featrues.py
site-packages/virsorter/scripts/circular-extend.py
site-packages/virsorter/scripts/circular-linear-split.py
site-packages/virsorter/scripts/circular-remove-partial-gene.py
site-packages/virsorter/scripts/classify-trimed.py
site-packages/virsorter/scripts/classify.py
site-packages/virsorter/scripts/diff-seq.py
site-packages/virsorter/scripts/echo.py
site-packages/virsorter/scripts/extract-feature-from-gff.py
site-packages/virsorter/scripts/extract-feature-from-hmmout.py
site-packages/virsorter/scripts/extract-provirus-seqs.py
site-packages/virsorter/scripts/filter-score-table.py
site-packages/virsorter/scripts/filter-seqs-by-gff.py
site-packages/virsorter/scripts/filter-table-and-add-suffix-to-seqname.py
site-packages/virsorter/scripts/finalize-boundary-file.py
site-packages/virsorter/scripts/get-hallmark-cnt-for-each-seq.py
site-packages/virsorter/scripts/get-list-from-seqfile.py
site-packages/virsorter/scripts/get-seq-w-lt2gene-w-hallmark.py
site-packages/virsorter/scripts/keep-original-seq.py
site-packages/virsorter/scripts/make-affi-contigs-tabfile-on-split-gff.py
site-packages/virsorter/scripts/make-affi-contigs-tabfile.py
site-packages/virsorter/scripts/merge-clf-from-groups.py
site-packages/virsorter/scripts/merge-clf-trim-from-groups.py
site-packages/virsorter/scripts/merge-hmm-gff-features.py
site-packages/virsorter/scripts/merge-provirus-from-groups.py
site-packages/virsorter/scripts/modify-seqname-for-dramv.py
site-packages/virsorter/scripts/pick-viral-contig-from-clf.py
site-packages/virsorter/scripts/prepdb-parse-uniprot.py
site-packages/virsorter/scripts/prepdb-split-pfam-by-domain.py
site-packages/virsorter/scripts/prepdb-train-MSA-convert.py
site-packages/virsorter/scripts/prepdb-train-even-subsample-seqs.py
site-packages/virsorter/scripts/prepdb-train-extract-hallmark-genes-from-refseq.py
site-packages/virsorter/scripts/prepdb-train-get-random-genome-fragments.py
site-packages/virsorter/scripts/prepdb-train-get-seq-from-hmm-domtbl.py
site-packages/virsorter/scripts/prepdb-train-id2taxonid2taxon-norank.py
site-packages/virsorter/scripts/prepdb-train-id2taxonid2taxon.py
site-packages/virsorter/scripts/prepdb-train-pick-random-genome-per-taxon.py
site-packages/virsorter/scripts/prepdb-train-remove-gap.py
site-packages/virsorter/scripts/prepdb-train-sample-random-fragments-per-contig-for-env.py
site-packages/virsorter/scripts/prepdb-train-sample-random-fragments-per-genome-for-env.py
site-packages/virsorter/scripts/prepdb-train-sample-random-fragments-per-genome-for-refseq.py
site-packages/virsorter/scripts/prepdb-train-split-seqfile-even-seqnum-per-file.py
site-packages/virsorter/scripts/prepdb-train-update-ete-ncbidb.py
site-packages/virsorter/scripts/provirus.py
site-packages/virsorter/scripts/remove-short-seq-wo-hallmark.py
site-packages/virsorter/scripts/sandbox/extract-feature-from-gff-original.py
site-packages/virsorter/scripts/sandbox/get-seq-length.py
site-packages/virsorter/scripts/sandbox/parse-mmfa.py
site-packages/virsorter/scripts/sandbox/pick-seq-in-list-from-multi-seqfiles.py
site-packages/virsorter/scripts/sandbox/pick-seq-in-list.py
site-packages/virsorter/scripts/sandbox/pick-seq-not-in-list.py
site-packages/virsorter/scripts/sandbox/pick-viral-faa-from-clf-by-group.py
site-packages/virsorter/scripts/sandbox/prepdb-split-pfam-by-domain.sh
site-packages/virsorter/scripts/sandbox/prepdb-train-sample-random-fragments-per-genome-low-mem.py
site-packages/virsorter/scripts/sandbox/split-mmmsa-by-cluster.py
site-packages/virsorter/scripts/sandbox/summarize.py
site-packages/virsorter/scripts/sandbox/tabularize-seqinfo-contig-as-genome.py
site-packages/virsorter/scripts/sandbox/tabularize-seqinfo-file-as-genome.py
site-packages/virsorter/scripts/sandbox/update-taxfile.py
site-packages/virsorter/scripts/sandbox/vfam.py
site-packages/virsorter/scripts/split-gff-even-seqnum-per-file.py
site-packages/virsorter/scripts/split-seqfile-even-bp-per-file.py
site-packages/virsorter/scripts/subsample-faa.py
site-packages/virsorter/scripts/train-model.py
site-packages/virsorter/template-config-original.yaml
site-packages/virsorter/utils.py
site-packages/virsorter/virsorter.py
